Computational Data Science Lab
Computational Data Science Lab
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Publications

The absence of evidence is not evidence for absence.    Carl Sagan



Publications

A complete list of scientific publications can be found in the following major online public servers and search engines:



NASA ADS



arXiv.org

Google Scholar



bioRxiv.org

2021     2020     2019     2018     2017     2016     2015     2014     2013     2011     2010     2009     2007    

    2021
  • 2021

  • 28.  Amir Shahmoradi, Fatemeh Bagheri (2021). ParaMonte: A high-performance serial/parallel Monte Carlo simulation library for C, C++, Fortran. Journal of Open Source Software (JOSS).
    Links:   PDF    NASA ADS    Google Scholar    arXiv   
    doi: 10.21105/joss.02741   
    (arXiv)
    (doi)

  • 27.  Christopher Bryant, Joshua Alexander Osborne, Amir Shahmoradi (2021). How unbiased statistical methods lead to biased scientific discoveries: A case study of the Efron-Petrosian statistic applied to the luminosity-redshift evolution of Gamma-Ray Bursts. Monthly Notices of Royal Astronomical Society (MNRAS) 504:4192-4203.
    Links:   PDF    NASA ADS    Google Scholar    arXiv   
    (arXiv)

  • 26.  Joshua Alexander Osborne, Fatemeh Bagheri, Amir Shahmoradi (2021). Are there radio-loud and radio-quiet Gamma-Ray Bursts?. Monthly Notices of Royal Astronomical Society (MNRAS) 502:5622-5630.
    Links:   PDF    NASA ADS    Google Scholar    arXiv   
    (arXiv)
    • 2020
  • 2020

  • 25.  Shashank Kumbhare, Amir Shahmoradi (2020). MatDRAM: A pure-MATLAB Delayed-Rejection Adaptive Metropolis-Hastings Markov Chain Monte Carlo Sampler. Journal of Computer Physics Communications (submitted).
    Links:   PDF    NASA ADS    Google Scholar    arXiv   
    (arXiv)

  • 24.  Amir Shahmoradi, Fatemeh Bagheri, Joshua Alexander Osborne (2020). Fast fully-reproducible streamlined serial/parallel Monte Carlo/MCMC simulations and visualizations via ParaMonte::Python library. Journal of Open Source Software (submitted).
    Links:   PDF    NASA ADS    Google Scholar    arXiv   
    (arXiv)

  • 23.  Amir Shahmoradi, Fatemeh Bagheri (2020). ParaDRAM: A Cross-Language Toolbox for Parallel High-Performance Delayed-Rejection Adaptive Metropolis Markov Chain Monte Carlo Simulations. Computer Methods in Applied Mechanics and Engineering (submitted).
    Links:   PDF    NASA ADS    Google Scholar    arXiv   
    (arXiv)

  • 22.  Joshua A. Osborne, Amir Shahmoradi, Robert J. Nemiroff (2020). A Multilevel Empirical Bayesian Approach to Estimating the Unknown Redshifts of 1366 BATSE Catalog Long-Duration Gamma-Ray Bursts. The Astrophysical Journal (ApJ) 903:33-133.
    Links:   PDF    NASA ADS    Google Scholar    arXiv   
    doi: 10.3847/1538-4357/abb9b7   
    (arXiv)
    (doi)
    • 2019
  • 2019

  • 21.  Amir Shahmoradi, Robert J. Nemiroff (2019). A Catalog of Redshift Estimates for 1366 BATSE Long-Duration Gamma-Ray Bursts: Evidence for Strong Selection Effects on the Phenomenological Prompt Gamma-Ray Correlations. .
    Links:   PDF    NASA ADS    Google Scholar    arXiv   
    (arXiv)
    • 2018
  • 2018

  • 20.  E. A. B. F. Lima, A. Ozkan, N. Ghousifam, J. T. Oden, Amir Shahmoradi, M. N. Rylander, B. Wohlmuth, and T. E. Yankeelov (2018). Calibration of Multi-Parameter Models of Avascular Tumor Growth Using Time Resolved Microscopy Data. Nature Scientific Reports.
    Links:   PDF    Google Scholar   

  • 19.  E. A. B. F. Lima, A. Ozkan, N. Ghousifam, J. T. Oden, Amir Shahmoradi, M. N. Rylander, B. Wohlmuth, and T. E. Yankeelov (2018). Calibration of Multi-Parameter Models of Avascular Tumor Growth Using Time Resolved Microscopy Data. ICES Reports.
    Links:   PDF   
    • 2017
  • 2017

  • 18.  Amir Shahmoradi (2017). Multilevel Bayesian Parameter Estimation in the Presence of Model Inadequacy and Data Uncertainty. arXiv:1711.10599.
    Links:   PDF    NASA ADS    Google Scholar    arXiv   
    (arXiv)

  • 17.  Amir Shahmoradi (2017). A Tutorial on Bayesian Parameter Estimation in the Presence of Model Inadequacy and Data Uncertainty. (draft).
    Links:   PDF   

  • 16.  E.A.B.F. Lima, J.T. Oden, B. Wohlmuth, Amir Shahmoradi, D.A. Hormuth, T.E. Yankeelov, L. Scarabosio, T. Horger (2017). Selection and validation of predictive models of radiation effects on tumor growth based on noninvasive imaging data. Computer Methods in Applied Mechanics and Engineering.
    Links:   PDF    Google Scholar   
    doi: 10.1016/j.cma.2017.08.009   
    (doi)
    • 2016
  • 2016

  • 15.  R. Walker, P.E. Navas, S.H. Friedman, S. Galliani, A. Karolak, F. MacFarlane, R. Noble, J. Poleszczuk, S. Russell, K.A. Rejniak, Amir Shahmoradi, F. Ziebell, J. Brayer, D. Abate-Daga, H. Enderling (2016). Enhancing synergy of CAR T cell therapy and oncolytic virus therapy for pancreatic cancer. Cold Spring Harbor Labs Journals.
    Links:   PDF    Google Scholar    bioRxiv   
    doi: 10.1101/055988   
    (doi)

  • 14.  Amir Shahmoradi (2016). 101. You and Your Research: Hamming’s crash-course on career success. (opinion).
    Links:   PDF    Google Scholar   

  • 13.  Amir Shahmoradi, C. O. Wilke (2016). Dissecting the roles of local packing density and longer-range effects in protein sequence evolution. Proteins: Structure, Function, and Bioinformatics.
    Links:   PDF    NASA ADS    Google Scholar    arXiv    bioRxiv   
    doi: 10.1002/prot.25034   
    (arXiv)
    (doi)

  • 12.  E. L. Jackson, Amir Shahmoradi, S. J. Spielman, B. R. Jack, C. O. Wilke (2016). Intermediate divergence levels maximize the strength of structure-sequence correlations. Protein Science.
    Links:   PDF    Google Scholar   
    doi: 10.1002/pro.2920   
    (doi)
    • 2015
  • 2015

  • 11.  H. Luo, M. Delshad, Z. Li, Amir Shahmoradi (2015). Numerical simulation of the impact of polymer rheology on polymer injectivity using a multilevel local grid refinement method. Petroleum Science.
    Links:   PDF    Google Scholar   
    doi: 10.1007/s12182-015-0066-1   
    (doi)

  • 10.  Amir Shahmoradi, Robert J. Nemiroff (2015). Short versus long gamma-ray bursts: a comprehensive study of energetics and prompt gamma-ray correlations. Monthly Notices of the Royal Astronomical Society (MNRAS) 451:4645-4662.
    Links:   PDF    NASA ADS    Google Scholar    arXiv   
    doi: 10.1093/mnras/stv714   
    (arXiv)
    (doi)
    • 2014
  • 2014

  • 9.  Amir Shahmoradi (2014). What every scientist needs to know. (opinion).
    Links:   PDF   

  • 8.  Amir Shahmoradi, D. K. Sydykova, S. J. Spielman, E. L. Jackson, E. T. Dawson, A. G. Meyer, C. O. Wilke (2014). Predicting evolutionary site variability from structure in viral proteins: buriedness, packing, flexibility, and design. Journal of Molecular Evolution (JME) 79:130–142.
    Links:   PDF    NASA ADS    Google Scholar    arXiv    bioRxiv   
    doi: 10.1007/s00239-014-9644-x   
    pmcid: PMC4216736   
    (arXiv)
    (doi)
    • 2013
  • 2013

  • 7.  Amir Shahmoradi (2013). Gamma-Ray bursts: Energetics and Prompt Correlations. Stanford Conference Proceedings, C1304143, paper 14.
    Links:   PDF    NASA ADS    arXiv   
    (arXiv)

  • 6.  Amir Shahmoradi (2013). A Multivariate Fit Luminosity Function and World Model for Long Gamma-Ray Bursts. The Astrophysical Journal (ApJ) 766:111-133.
    Links:   PDF    NASA ADS    Google Scholar    arXiv   
    doi: 10.1088/0004-637X/766/2/111   
    (arXiv)
    (doi)
    • 2011
  • 2011

  • 5.  Amir Shahmoradi, Robert J. Nemiroff (2011). The possible impact of gamma-ray burst detector thresholds on cosmological standard candles. Monthly Notices of the Royal Astronomical Society (MNRAS) 411:1843-1856.
    Links:   PDF    NASA ADS    Google Scholar    arXiv   
    doi: 10.1111/j.1365-2966.2010.17805.x   
    (arXiv)
    (doi)
    • 2010
  • 2010

  • 4.  Amir Shahmoradi, Robert J. Nemiroff (2010). Hardness as a spectral peak estimator for gamma-ray bursts. Monthly Notices of the Royal Astronomical Society (MNRAS) 407:2075-2090.
    Links:   PDF    NASA ADS    Google Scholar    arXiv   
    doi: 10.1111/j.1365-2966.2010.16793.x   
    (arXiv)
    (doi)
    • 2009
  • 2009

  • 3.  Amir Shahmoradi, Robert J. Nemiroff (2009). How Real detector thresholds create false standard candles. American Institute of Physics (AIP) Conference Proceedings 1133:425-427.
    Links:   PDF    NASA ADS    Google Scholar   
    doi: 10.1063/1.3155940   
    (doi)

  • 2.  Robert J. Nemiroff, Amir Shahmoradi (2009). What Causes GRB Time Dilation?. American Institute of Physics (AIP) Conference Proceedings 1133:323-327.
    Links:   PDF    NASA ADS    Google Scholar   
    doi: 10.1063/1.3155911   
    (doi)
    • 2007
  • 2007

  • 1.  Amir Shahmoradi, Mahmoud Bahmanabadi, Jalal Samimi (2007). On the Muon Content of Gamma-Ray-Initiated Extensive Air Showers. Proceedings of the 11th National Conference on Astronomical Research.
    Links:   PDF   

2021     2020     2019     2018     2017     2016     2015     2014     2013     2010     2009     2008    

    2021
  • 2021

  • 19.  A. Shahmoradi. Invited Talk. Data science competencies for physics education. The American Physical Society March Meeting, Virtual Meeting, March 2021.

    • 2020
  • 2020

  • 18.  A. Shahmoradi. Invited Talk. Deep Learning Data Science Competencies to Promote Workplace Readiness. The American Physical Society March Meeting, Washington, D.C., March 2020.
    PDF   
    • 2017
  • 2017

  • 17.  A. Shahmoradi. Invited Talk. Multilevel Bayesian Analysis of Data in the Presence of Model Inadequacy and Measurement Error. Institute for Computational Engineering and Sciences, University of Texas, Austin, Nov 10 2017.
    PDF   
    • 2016
  • 2016

  • 16.  A. Shahmoradi. Invited Talk. How Real Detector Thresholds Create False Standard Candles. Department of Physics, Sharif University of Technology, Tehran, May 1 2016.
    PDF   

  • 15.  A. Shahmoradi. Invited Talk. 101. You and Your Career: Hamming’s crash-course on career success. Department of Physics, Sharif University of Technology, Tehran, April 26 2016.
    PDF   

  • 14.  A. Shahmoradi. Invited Talk. How Real Detector Thresholds Create False Standard Candles. Cosmology Group, Department of Physics, Sharif University of Technology, Tehran, April 24 2016.
    PDF   

  • 13.  A. Shahmoradi. Invited Talk. What Every Scientist Needs to Know: Lessons Learned from the World of Cosmology. Department of Physics, Sharif University of Technology, Tehran, April 19 2016.
    PDF   
    • 2015
  • 2015

  • 12.  A. Shahmoradi. Contributed Talk. Dissecting the relationship between protein structure and sequence evolution. BEACON Congress, August 2015, Lansing, MI, USA.
    PDF   

  • 11.  A. Shahmoradi. Contributed Talk. Dissecting the relationship between protein structure and sequence variation. APS March Meeting, 2015, San Antonio, TX, USA.
    PDF   
    • 2014
  • 2014

  • 10.  A. Shahmoradi, DK Sydykova, SJ Spielman, EL Jackson, ET Dawson, AG Meyer, CO Wilke. Contributed Talk. Structural Determinants of Protein Evolution. BEACON Congress, Aug 19 2014.
    PDF   

  • 9.  A. Shahmoradi, DK Sydykova, SJ Spielman, EL Jackson, ET Dawson, AG Meyer, CO Wilke. Contributed Talk. Structural Determinants of Protein Evolution: buriedness vs. flexibility vs. design. SMBE Annual Meeting, June 10 2014, Puerto Rico, USA.
    PDF   

  • 8.  A. Shahmoradi. Contributed Talk. Classification and Energetics of Cosmological Gamma-Ray Bursts. APS April Meeting, April 2014, Savannah, GA.
    PDF   

  • 7.  A. Shahmoradi, R. J. Nemiroff. Contributed Talk. Classification and Energetics of Cosmological Gamma-Ray Bursts. 223rd American Astronomical Society Meeting, Washington, D.C., Janurary 5-9, 2014.
    PDF   
    • 2013
  • 2013

  • 6.  A. Shahmoradi, Wilke Lab at UT Austin. Contributed Talk. Insights into Protein Evolution via Molecular Dynamics Simulations. BEACON Congress, Aug 12-15, 2013, Lansing, MI, USA.
    PDF   

  • 5.  A. Shahmoradi. Contributed Poster. Gamma-Ray bursts: Energetics and Prompt Correlations. 7th Huntsville Gamma-Ray Burst Symposium, Nashville, TN, April 14-18, 2013.
    PDF   
    • 2010
  • 2010

  • 4.  A. Shahmoradi, R. J. Nemiroff. Contributed Talk. Gamma-Ray Bursts as Cosmological Tools. 10th Great Lakes Cosmology Workshop, Jun 2010, Chicago, IL, USA.
    PDF   

  • 3.  A. Shahmoradi. Invited Talk. Gamma-Ray Bursts as Cosmological Tools. Department of Physics, Michigan Tech University, Feb 2010, Houghton, MI, USA.
    PDF   
    • 2009
  • 2009

  • 2.  A. Shahmoradi. Invited Talk. Are Gamma-Ray Bursts Cosmological Standard Candles?. Department of Physics, Michigan Tech University, April 2009, Houghton, MI, USA.
    PDF   
    • 2008
  • 2008

  • 1.  A. Shahmoradi, R. J. Nemiroff. Contributed Talk. How Real Detector Thresholds Create False Standard Candles. 6th Huntsville Gamma-Ray Burst Symposium, Oct 2008, Huntsville, Al, USA.
    PDF   

Computational Data Science Lab

  • The University of Texas at Arlington
  • amir.shahmoradi@uta.edu
  • shahmoradi@utexas.edu
  • a.shahmoradi@uta.edu
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Department of Physics | Data Science Program
Science & Engineering Innovation & Research Bdg
655 W Mitchell St | SEIR 365
Arlington, TX 76010-1765

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